Ep. 49: Dr. Regal seeks comet power while Dark MegaMan attempts self-deification before deletion.
Aired on September 10, 2005

49
Three decades after Duo’s comet struck Earth, Dr. Regal intends to traverse space and time to harness its energy. MegaMan, ProtoMan, SearchMan, and Colonel rush through time to stop Dark MegaMan, who was dispatched to assist Regal in accessing the comet. However, Dark MegaMan intends to absorb the power himself to become the ultimate NetNavi. Slur refuses to permit this and deletes him. Before fading away, Dark MegaMan self-destructs, thereby preventing Dr. Regal from succeeding. The heroes return home, and the remnants of Dark MegaMan’s being rejoin with MegaMan’s soul, leading MegaMan to forgive him.
Episodes
- Ep. 45 · CrossFusion members investigate ruins in Netopia linked to Duo's symbol and alien history.
- Ep. 46 · CrossFusion members infiltrate Neo WWW tower to rescue Tesla while their Crests fade.
- Ep. 47 · Charlie discovers Tesla sleeping in his apartment while Dark MegaMan targets Yuri's Crest.
- Ep. 48 · Asteroid invasion forces MegaMan team to confront Slur directly
- Ep. 49 · Dr. Regal seeks comet power while Dark MegaMan attempts self-deification before deletion.
- Ep. 50 · Baryl travels through time to help Lan's team fight an asteroid invasion.
- Ep. 51 · Bass returns with Nebula Grey power to delete Slur while Dr. Regal attacks Earth.